The Importance of Amino Acid Profile
At its core, the quality of a protein is fundamentally determined by its amino acid composition. The human body requires 20 different amino acids to synthesize new proteins, and nine of these are considered 'essential' because the body cannot produce them on its own. A high-quality or "complete" protein contains all nine essential amino acids in sufficient quantities to support the body's needs. Animal sources, such as meat, eggs, and dairy, are typically complete proteins. In contrast, many plant-based proteins are considered "incomplete" because they are low in one or more essential amino acids, known as the "limiting amino acid".
- The nine essential amino acids include:
- Histidine
- Isoleucine
- Leucine
- Lysine
- Methionine
- Phenylalanine
- Threonine
- Tryptophan
- Valine
 
The good news is that combining different plant proteins with complementary amino acid profiles (e.g., rice and beans) within the same day can provide all the essential amino acids needed for a balanced diet.
The Critical Role of Digestibility and Bioavailability
Even if a protein has an ideal amino acid profile, its quality is diminished if the body cannot properly digest and absorb it. This brings us to two other crucial factors: digestibility and bioavailability. Digestibility refers to how easily the body can break down and absorb the protein. Bioavailability is the proportion of the absorbed amino acids that are available for use in protein synthesis.
Assessment Methods Various methods have been developed to measure protein quality, with two prominent ones being:
- Protein Digestibility Corrected Amino Acid Score (PDCAAS): A long-standing method that corrects a protein's amino acid score for fecal digestibility.
- Digestible Indispensable Amino Acid Score (DIAAS): A more recent and potentially more accurate method that uses ileal (end of the small intestine) digestibility, which is a better indicator of how much protein is actually absorbed and used by the body.
Proteins from animal sources typically have higher digestibility (around 95-98%) compared to most plant proteins (70-85%). This is often due to the presence of fiber and anti-nutritional factors in plants that can inhibit digestion.
How Processing and Cooking Impact Protein
Food processing and cooking methods are major influences on protein quality, with both positive and negative outcomes. The application of heat, for example, can cause protein denaturation, a process where the protein's structure unfolds. In many cases, this makes proteins more accessible to digestive enzymes and improves digestibility, as seen when cooking eggs or meat. However, excessive heat can lead to the formation of cross-linkages or the Maillard reaction, which can decrease digestibility and destroy certain heat-sensitive amino acids, such as lysine.
- Processing effects include:
- Denaturation: Mild heat can improve digestibility. Excessive heat can cause aggregation and reduce nutritional value.
- Anti-nutritional factors: Some processing methods, like soaking and fermentation, can deactivate anti-nutritional factors (e.g., trypsin inhibitors in legumes), thereby increasing protein digestibility.
- Milling and Extrusion: These processes can alter protein structure and functionality, sometimes to the detriment of quality.
 
The Effect of Storage on Protein Quality
Proper storage is critical for maintaining protein quality over time. Research on stored cereal grains shows that higher temperatures and moisture can cause significant nutritional changes. For example, studies have found a reduction in total available lysine and overall protein digestibility in grains stored at elevated temperatures for several months. Protein powders can also be affected by storage conditions, with high temperatures and prolonged duration leading to degradation and changes in color and pH. To minimize nutrient loss, foods should be stored in cool, dry conditions.
Animal vs. Plant Proteins: A Quality Comparison
For a clear understanding of the differences, let's compare the characteristics of animal and plant proteins:
| Characteristic | Animal Protein | Plant Protein | 
|---|---|---|
| Amino Acid Profile | Complete, containing all essential amino acids. | Often incomplete, lacking or having low levels of one or more essential amino acids. | 
| Typical Digestibility | Generally very high (approx. 95-98%). | Generally lower (approx. 70-85%), due to fiber and anti-nutrients. | 
| Limiting Amino Acids | Typically none, or a different one for specific products. | Common limiting amino acids include lysine (cereals) and methionine (legumes). | 
| Complementarity | Not necessary for a complete profile. | Can be combined to form a complete protein, such as grains and legumes. | 
Conclusion: Maximizing Your Protein Quality
Protein quality is a complex interplay of several factors, including amino acid composition, digestibility, processing, and storage. While animal proteins tend to be higher in quality due to their complete amino acid profile and high digestibility, a well-planned plant-based diet can easily meet all protein needs through the strategic combination of different food sources. For optimal health, focus on a balanced, varied diet of both plant and animal foods where possible, paying attention to how they are processed and prepared. Understanding these influences on what affects the quality of protein empowers individuals to make more informed dietary choices for better nutrition.
For more information on protein requirements across different life stages, consult authoritative health organizations, such as the Food and Agriculture Organization (FAO) of the United Nations, on their resources for dietary protein and amino acid needs.(https://www.fao.org/home/en)