The Body's Primary Energy Sources
Carbohydrates are the body's preferred source of immediate energy. When you consume carbohydrates, your body breaks them down into glucose, which is then used by your cells for fuel or stored in the liver and muscles as glycogen for later use. This process is quick and efficient, providing the readily available energy needed for daily activities and high-intensity exercise. Protein, on the other hand, is primarily utilized as the building block for muscles, enzymes, and other body tissues. However, in the absence of sufficient carbohydrates, your body can tap into alternative energy pathways. When your stored glycogen runs out, a process that can take a couple of days, your body is forced to find a new source of fuel.
The Metabolic Shift: Ketosis and Gluconeogenesis
Entering the State of Ketosis
With low carbohydrate availability, your body initiates a significant metabolic shift. The liver begins to break down stored fat into molecules called ketone bodies. This process, known as ketogenesis, leads to a metabolic state called ketosis, where ketone bodies become the primary fuel source for most of the body's cells. This is the central principle behind ketogenic diets. This adaptation allows the body to survive during periods of prolonged starvation or very low carbohydrate intake.
The Role of Gluconeogenesis
While ketosis provides fuel for many organs, some tissues, most notably parts of the brain and red blood cells, still require glucose. To meet this demand, the body initiates gluconeogenesis, or the "creation of new glucose". In this process, the liver uses non-carbohydrate sources—including glycerol from fat and certain amino acids from protein—to synthesize glucose. This means that if you are consuming a high-protein, low-carb diet, some of that protein will be used to create glucose, rather than for its primary functions of building and repairing tissues. This can have implications for muscle preservation if a severe calorie deficit is also present.
Short-Term Side Effects: The 'Keto Flu'
As your body transitions from burning glucose to burning fat for fuel, it is common to experience a range of temporary, flu-like symptoms, often called the "keto flu". These symptoms typically appear within two to seven days of starting a very low-carb diet and can include:
- Headaches
 - Fatigue and irritability
 - Brain fog and difficulty concentrating
 - Nausea and digestive issues (e.g., constipation or diarrhea)
 - Muscle cramps, which can be caused by temporary electrolyte imbalances
 - Bad breath with a distinctive, fruity smell, caused by the ketone acetone escaping through the breath These symptoms usually subside within a couple of weeks as your body adapts to its new metabolic state. However, adequate hydration and electrolyte intake are crucial to minimize their severity.
 
Potential Long-Term Effects and Health Considerations
While the body is highly adaptable, a sustained low-carbohydrate approach can have several long-term physiological consequences. For most people, a balanced diet is recommended for optimal health.
Comparison of Metabolic Approaches
| Feature | High Protein, Low Carb Diet | Balanced Diet (Moderate Carb) | 
|---|---|---|
| Primary Fuel Source | Ketones from fat; supplemented by glucose from gluconeogenesis | Glucose from carbohydrates | 
| Initial Adaptation | Possible "keto flu" symptoms, including fatigue and headaches | No major metabolic shift or flu-like symptoms | 
| Energy Levels | Can be steady but may feel lower for high-intensity activity | Provides quick, efficient energy for high-intensity exercise | 
| Muscle Preservation | Supported by high protein intake, but may risk muscle loss in severe calorie deficits | Supported by balanced macronutrients and adequate calories | 
| Fiber Intake | Often lower, potentially leading to digestive issues like constipation | Typically higher due to fruits, vegetables, and whole grains | 
| Micronutrient Profile | Potential for deficiencies in B vitamins, folate, magnesium, and others found in carb-rich foods | Easier to meet a wide range of vitamin and mineral requirements | 
| Cognitive Function | Can cause initial brain fog; brain eventually adapts to using ketones but requires some glucose | Sustained glucose supply from complex carbs supports optimal function | 
Impact on Digestive Health and Micronutrients
Because low-carbohydrate diets often restrict grains, fruits, and starchy vegetables, they can be low in dietary fiber. Fiber is essential for digestive regularity and feeding beneficial gut bacteria, and its lack can lead to constipation and negatively impact gut microbiome health. Furthermore, by cutting out entire food groups, you risk missing out on key vitamins and minerals, including B vitamins, folate, magnesium, and calcium.
Exercise Performance
For individuals engaged in high-intensity exercise, a sustained low-carb approach can be detrimental. Carbohydrates are the primary fuel for these activities, and depleted glycogen stores can lead to reduced performance, endurance, and overall strength. While the body adapts, it may not be the optimal state for peak athletic performance.
Other Potential Health Risks
For otherwise healthy individuals, the long-term effects of low-carb diets are still debated, and research results are mixed. Some studies link very high protein diets to potential kidney strain, particularly in those with pre-existing kidney issues. Other research indicates potential risks related to heart disease or complications like osteoporosis, though the quality and type of fat consumed seem to play a major role. More long-term, high-quality research is needed to fully understand all potential risks.
Conclusion
Consuming enough protein but not enough carbohydrates forces the body to undergo a metabolic adaptation, primarily through ketosis and gluconeogenesis, to source energy from fat and protein. While the body is resilient and can adapt to this new state, the transition often comes with short-term side effects like fatigue and brain fog, known as the "keto flu". In the long term, insufficient carbohydrate intake can negatively affect high-intensity exercise performance, digestive health due to low fiber, and potentially lead to micronutrient deficiencies. While this approach can be effective for short-term weight loss and blood sugar management for some individuals, it is not a one-size-fits-all solution. For overall health, a balanced diet rich in nutrient-dense carbohydrates, healthy fats, and adequate protein is often a more sustainable and less restrictive approach.
For more detailed nutritional guidance, it is always recommended to consult with a healthcare professional or registered dietitian. A comprehensive overview can also be found in articles from institutions like Harvard Health on the ketogenic diet and its metabolic effects (https://www.health.harvard.edu/blog/ketogenic-diet-is-the-ultimate-low-carb-diet-good-for-you-2017072712089).