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Is there anything bad about taking probiotics? Risks, Side Effects, and Warnings

3 min read

While widely promoted for gut health, probiotics are not without potential downsides. According to the Cleveland Clinic, while most healthy people can safely take them, those with compromised immune systems face a small but serious risk of adverse side effects.

Quick Summary

Probiotics can cause temporary digestive issues like gas and bloating. Risks are higher for immunocompromised individuals, who may experience serious infections. Product quality and specific strains vary, and caution is needed for certain conditions like SIBO.

Key Points

  • Temporary Discomfort: The most common 'bad' effect is mild, temporary gas, bloating, or diarrhea as your gut adjusts to new bacteria.

  • High-Risk Individuals: Immunocompromised people, critically ill patients, and premature infants face a serious risk of infection from probiotics.

  • Underlying Conditions: People with SIBO or histamine intolerance may experience worsened symptoms from certain probiotics.

  • Varying Quality: The probiotic market is not strictly regulated, so product quality can vary significantly. Research and choose reputable brands.

  • Professional Guidance: It is crucial to consult a healthcare provider, especially if you have a pre-existing condition, before starting a probiotic.

  • Food vs. Supplements: Getting probiotics from fermented foods may be a safer, more diverse option for general wellness, while supplements offer a targeted, higher dose.

In This Article

Common Digestive Discomfort

For many healthy individuals, the most common 'bad' thing about taking probiotics is a mild and temporary digestive adjustment. When you first introduce new microorganisms to your gut, it can shift the balance of your gut microbiota, leading to some discomfort. These symptoms usually subside within a few days to a few weeks as your body adapts to the new bacteria. You can mitigate this by starting with a lower dosage and gradually increasing it over time.

Symptoms of Digestive Adjustment

  • Bloating and gas, caused by the bacteria fermenting carbohydrates.
  • Diarrhea or mild stomach upset.
  • Increased thirst, particularly with yeast-based probiotics.

Serious Risks for At-Risk Populations

While probiotics are largely safe for healthy people, they pose significant risks for specific vulnerable populations. In these groups, the risk of serious, systemic infection from the probiotic microorganisms entering the bloodstream becomes a concern.

Who Should Exercise Extreme Caution

  • Immunocompromised Individuals: People with weakened immune systems due to cancer, HIV/AIDS, or immunosuppressant drugs are at a heightened risk.
  • Critically Ill Patients: Those in intensive care units (ICU) or recovering from major surgery face a higher risk of complications.
  • Premature Infants: The immune and digestive systems of preemies are still developing, making them more susceptible to infection from probiotics.
  • Patients with Central Venous Catheters: The presence of these catheters increases the potential for bacteria to enter the bloodstream.

Small Intestinal Bacterial Overgrowth (SIBO)

Probiotics are not a one-size-fits-all solution for all digestive issues. For individuals with Small Intestinal Bacterial Overgrowth (SIBO), taking probiotics can sometimes worsen symptoms like bloating, gas, and abdominal pain. SIBO involves an overgrowth of bacteria in the small intestine, and adding more could exacerbate the problem. A proper diagnosis is crucial before starting probiotic supplementation for persistent gut issues.

Histamine Intolerance and Headaches

Certain fermented foods, like sauerkraut and some yogurts, contain biogenic amines, including histamine. Some probiotic strains can also produce histamine in the gut. For people with histamine intolerance who lack the enzyme to break it down, this can lead to an allergic-like reaction that can cause headaches or even migraines. In these cases, opting for specific, non-histamine-producing probiotic strains may be necessary.

Product Quality and Regulatory Oversight

Since probiotics are classified as dietary supplements in many countries, they are not regulated with the same strict standards as pharmaceuticals. This lack of oversight means there can be significant variance in product quality. Consumers should be aware that:

  • The number of Colony Forming Units (CFUs) listed on the label might not match the actual amount of viable bacteria at the expiration date.
  • Contaminants or allergens (like dairy, soy, or gluten) might be present.
  • Health claims may not be backed by robust scientific evidence for the specific strain included.

Probiotic Foods vs. Supplements: A Comparison

To choose the right approach, it is important to understand the differences between getting probiotics from food versus supplements.

Feature Probiotic-Rich Foods (e.g., yogurt, kimchi) Probiotic Supplements (e.g., capsules, powders)
Microbial Diversity Often offer a greater diversity of microbes and include prebiotics. Typically contain specific, high-dose strains selected for particular purposes.
Dosage Varies significantly depending on the food and fermentation process. Provides a consistent, measured dose of CFUs, often in the billions.
Effectiveness Can promote general gut health and a more diverse microbiome. Best for targeted health issues where a specific, clinically studied strain is needed.
Side Effects Generally lower risk of side effects, though biogenic amines can be a concern for some. Higher potential for temporary digestive issues, especially with high initial doses.
Regulation Considered food; standards vary. Minimal regulation; quality can be inconsistent.

The Bottom Line: When Caution is Key

For the average healthy person, probiotics are generally safe, and any side effects are usually mild and short-lived. However, the market is not without its pitfalls, and specific health conditions require careful consideration. Anyone with a compromised immune system, underlying health issues like SIBO, or a history of specific allergies should consult a healthcare professional before starting any probiotic regimen. Choosing high-quality products from reputable brands that specify the strain and CFU count is essential. For general gut health, focusing on a diet rich in prebiotic fiber and naturally fermented foods can be a safer, less expensive alternative for many people.


To learn more about the safety and efficacy of probiotics, review the findings in this comprehensive article from the National Institutes of Health: Risk and Safety of Probiotics.

Frequently Asked Questions

Yes, it is very common to experience a temporary increase in gas and bloating when you first start taking probiotics. This is a normal part of your gut adjusting to the new bacterial strains and usually subsides within a few weeks.

Individuals with compromised immune systems (due to conditions like cancer, HIV, or immunosuppressants), critically ill patients, those recovering from surgery, and premature infants should consult a healthcare provider before taking probiotics.

In healthy individuals, a harmful overdose of probiotics is unlikely, and taking too many will mostly lead to increased digestive discomfort like gas or bloating. For high-risk individuals, however, even a normal dose can pose a risk of infection.

Some probiotic-rich fermented foods contain biogenic amines like histamine, which can cause headaches in sensitive individuals. Certain probiotic strains can also produce histamine in the gut. If you are sensitive, look for specific strains that don't produce histamine.

If you experience worsening or persistent symptoms such as severe bloating, brain fogginess (potentially linked to SIBO), or an allergic-like reaction, you may be taking the wrong probiotic or have an underlying issue. It is best to stop and consult a doctor.

Most probiotics are sold as dietary supplements, which are not as strictly regulated by the FDA as prescription drugs. This means that the efficacy and contents can vary between brands, so it is important to choose a high-quality product from a reputable company.

Individuals with Small Intestinal Bacterial Overgrowth (SIBO) should be cautious with probiotics. Adding more bacteria, even 'good' ones, can sometimes worsen symptoms. It's best to consult a healthcare provider to address the SIBO directly.

References

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Medical Disclaimer

This content is for informational purposes only and should not replace professional medical advice.